UNITED STATES
SECURITIES AND EXCHANGE COMMISSION
Washington, DC 20549
    
FORM N-Q
      OMB APPROVAL
OMB Number: 3235-0578
Expires: February 28, 2006
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hours per response: 20.0

QUARTERLY SCHEDULE OF PORTFOLIO HOLDINGS OF REGISTERED MANAGEMENT
INVESTMENT COMPANY

Investment Company Act File Number: 811-21189

Registrant Name: PIMCO NEW YORK MUNICIPAL INCOME FUND III

Address of Principal Executive Offices: 1345 Avenue of the Americas New York, New York 10105

Name and Address of Agent for Service: Lawrence G. Altadonna — 1345 Avenue of the Americas New York, New York 10105

Registrant’s telephone number, including area code: 212-739-3371

Date of Fiscal Year End: September 30, 2006

Date of Reporting Period: June 30, 2006

Form N-Q is to be used by the registered management investment company, other than a small business investment company registered on Form N-5 (§§ 239.24 and 274.5 of this chapter), to file reports with the Commission, not later than 60 days after the close of the first and third fiscal quarters, pursuant to rule 30b 1-5 under the Investment Company Act of 1940 (17 CFR 270.30b1-5). The Commission may use the information provided on Form N-Q in its regulatory, disclosure review, inspection, and policymaking roles.

A registrant is required to disclose the information specified by Form N-Q, and the Commission will make this information public. A registrant is not required to the collection of information contained in Form N-Q unless the Form displays a currently valid Office of Management and Budget (‘‘OMB’’) control number. Please direct comments concerning the accuracy of the information collection burden estimate and any suggestions for reducing the burden to the Secretary, Securities and Exchange Commission, 450 Fifth Street, NW, Washington, DC 20549-0609. The OMB has reviewed this collection of information under the clearance requirements of 44 U.S.C. § 3507.




Item 1.    Schedule of Investments

PIMCO New York Municipal Income Fund III 
Schedule of Investments
June 30, 2006 (unaudited)


Principal
Amount
(000)
  Credit Rating
(Moody's/S&P)
Value*

NEW YORK MUNICIPAL BONDS & NOTES–78.0%

   
$   2,800 East Rochester Housing Auth. Rev., St. Mary's Residence Project, 5.375%, 12/20/22 (GNMA) NR/AAA $2,949,436
1,300 Erie Cnty. Industrial Dev. Agcy., Orchard Park Rev., 6.00%, 11/15/36 NR/NR 1,338,389
1,060 Liberty Dev. Corp. Rev., Goldman Sachs Headquarters, 5.25%, 10/1/35 Aa3/A+ 1,129,250
1,000 Long Island Power Auth., Electric System Rev., 5.00%, 9/1/27, Ser. C A3/A− 1,017,980
5,000 Metropolitan Transportation Auth. Rev., 5.00%, 11/15/31, Ser. F (MBIA) Aaa/AAA 5,100,600
1,000 Monroe Tobacco Asset Securitization Corp., Tobacco Settlement Rev., 6.375%, 6/1/35, (Pre-refunded @ $101, 6/1/10) (a) Aaa/AAA 1,095,830
2,000 Nassau Cnty. Tobacco Settlement Corp., Rev., 6.60%, 7/15/39, (Pre-refunded @ $101, 7/15/09) (a) Aaa/BBB− 2,166,280
7,195 New York City, GO, 5.00%, 3/1/33, Ser. I A1/AA− 7,267,525
5,000 New York City Municipal Water Finance Auth., Water & Sewer System Rev., 5.00%, 6/15/32, Ser. A Aa2/AA+ 5,067,500
1,750 New York City Transitional Finance Auth., GO, 5.375%, 3/1/27, Ser. 1 A1/AA− 1,840,160
2,995 New York Counties Tobacco Settlement Trust Rev., 5.625%, 6/1/35 Ba1/BBB 3,057,296
3,000 New York State Environmental Facs. Corp. Rev., 5.00%,
10/15/35 (c)
Aaa/AAA 3,065,100
1,000 Niagara Falls Public Water Auth., Water & Sewer System Rev., 5.00%, 7/15/34, Ser. A (MBIA) Aaa/AAA 1,021,360
1,855 Sachem Central School Dist. of Holbrook, GO, 5.00%, 6/15/30 (MBIA) Aaa/AAA 1,897,517
  State Dormitory Auth. Rev.,    
1,400     Catholic Health of Long Island, 5.10%, 7/1/34 Baa1/BBB 1,397,914
2,000     Columbia Univ., 5.00%, 7/1/24, Ser. A Aaa/AAA 2,067,840
2,250     Jewish Board Family & Children, 5.00%, 7/1/33 (AMBAC) Aaa/AAA 2,299,185
2,000     Kaleida Health Hospital, 5.05%, 2/15/25 (FHA) NR/AAA 2,048,100
3,250     Lenox Hill Hospital, 5.50%, 7/1/30 Ba2/NR 3,186,365
      Long Island Univ., Ser. A (Radian),    
2,040 5.00%, 9/1/23 Baa3/AA 2,071,151
4,000 5.00%, 9/1/32 Baa3/AA 4,048,320
3,000     Lutheran Medical Hospital, 5.00%, 8/1/31 (MBIA-FHA) Aaa/AAA 3,053,640
1,000     Mental Health Services Facs., 5.00%, 2/15/30, Ser. B (AMBAC) Aaa/AAA 1,022,410
      Mount St. Mary College (Radian),    
2,000 5.00%, 7/1/27 NR/AA 2,040,140
2,000 5.00%, 7/1/32 NR/AA 2,027,040
1,000     New York Univ., 5.00%, 7/1/31, Ser. 2 (AMBAC) Aaa/AAA 1,018,530
6,150     North General Hospital, 5.00%, 2/15/25 NR/AA− 6,239,482
1,000     North Shore L.I. Jewish Group, 5.50%, 5/1/33 A3/NR 1,043,180
1,000     NY & Presbyterian Hospital Rev., 4.75%, 8/1/27 (AMBAC-FHA) Aaa/AAA 1,005,510




PIMCO New York Municipal Income Fund III 
Schedule of Investments
June 30, 2006 (unaudited) (continued)


Principal
Amount
(000)
  Credit Rating
(Moody's/S&P)
Value*
$  3,740     Saint Barnabas Hospital, 5.00%, 2/1/31, Ser. A (AMBAC-FHA) Aaa/AAA $3,802,458
1,000     School Dist. Financing, 5.00%, 10/1/30, Ser. D (MBIA) Aaa/AAA 1,024,130
1,250     Skidmore College, 5.00%, 7/1/28 (FGIC) Aaa/NR 1,287,300
2,500     Sloan-Kettering Center Memorial, 5.00%, 7/1/34, Ser. 1 Aa2/AA 2,530,850
3,600 State Personal Income Tax, 5.00%, 3/15/32, (Pre-refunded @
$100, 3/15/13) (a)
Aa3/AAA 3,807,144
1,250     Student Housing Corp., 5.125%, 7/1/34 (FGIC) Aaa/AAA 1,296,825
1,500     Teachers College, 5.00%, 7/1/32 (MBIA) Aaa/NR 1,533,435
2,500     Winthrop-Nassau Univ., 5.75%, 7/1/28 Baa1/NR 2,609,400
620     Winthrop Univ., Hospital Association., 5.50%, 7/1/32, Ser. A Baa1/NR 638,823
2,000     Yeshiva Univ., 5.125%, 7/1/34 (AMBAC) Aaa/NR 2,074,920
1,900 State Urban Dev. Corp. Personal Income Tax Rev., 5.00%, 3/15/33, Ser. C-1 (Pre-refunded @ $100, 3/15/13) (a) Aa3/AAA 2,009,326
1,000 State Urban Dev. Corp. Rev., 5.00%, 3/15/35, Ser. B NR/AAA 1,020,420
2,000 Warren & Washington Counties Industrial Dev. Agcy. Fac. Rev., Glens Falls Hospital, 5.00%, 12/1/35, Ser. A (FSA) Aaa/AAA 2,035,800
1,250 Westchester Cnty. Industrial Dev. Agcy. Continuing Care Retirement Rev., Kendal on Hudson, 6.50%, 1/1/34 NR/NR 1,309,025
  Total New York Municipal Bonds & Notes (cost–$96,735,927)   99,562,886

OTHER MUNICIPAL BONDS & NOTES–11.6%

 

California–4.9%

   
5,560 Golden State Tobacco Securitization Corp. Rev., Tobacco Settlement, 6.75%, 6/1/39, Ser. 2003-A-1 Baa3/BBB 6,224,976
 

District of Columbia–0.1%

   
175 Tobacco Settlement Financing Corp. Rev., 6.50%, 5/15/33 Baa3/BBB 196,992
 

Puerto Rico–5.8%

   
  Children's Trust Fund Tobacco Settlement Rev.,    
1,700 5.50%, 5/15/39 Baa3/BBB 1,739,134
580 5.625%, 5/15/43 Baa3/BBB 595,214
1,000 Electric Power Auth., Power Rev., 5.125%, 7/1/29, Ser. NN A3/BBB+ 1,012,580
4,000 Public Building Auth. Rev., Gov't Facs., 5.00%, 7/1/36, Ser. I (GTD) Baa3/BBB 4,005,200
      7,352,128
 

Rhode Island–0.4%

   
500 Tobacco Settlement Financing Corp. Rev., 6.125%, 6/1/32, Ser. A Baa3/BBB 522,445
 

South Carolina–0.3%

   
370 Tobacco Settlement Rev. Management Auth., 6.375%, 5/15/30, Ser. B Baa3/BBB 412,702
 

Washington–0.1%

   
135 Tobacco Settlement Auth., Tobacco Settlement Rev., 6.625%, 6/1/32 Baa3/BBB 147,583
  Total Other Municipal Bonds & Notes (cost–$12,659,615)   14,856,826

 




PIMCO New York Municipal Income Fund III 
Schedule of Investments
June 30, 2006 (unaudited) (continued)


Principal
Amount
(000)
  Credit Rating
(Moody's/S&P)
Value*

NEW YORK VARIABLE RATE NOTES (b)(d)(e)–9.4%

$    121 Liberty Dev. Corp. Rev., 11.19%, 10/1/35, Ser. 1251 Aa3/NR $173,700
1,555 Metropolitan Transportation Auth. Rev., 7.37%, 11/15/32, Ser. 862 (FGIC) Aaa/NR 1,685,122
550 Mortgage Agcy. Rev., 6.938%, 10/1/27, Ser. 1199 Aa1/NR 550,578
1,000 New York City Trust for Cultural Resources Rev., 8.17%, 2/1/34, Ser. 950 (FGIC) Aaa/NR 1,100,850
1,205 State Dormitory Auth. Rev., 8.877%, 7/1/32 NR/NR 1,353,673
  State Environmental Facs. Corp., State Clean Water & Drinking Rev.,    
1,005 7.079%, 7/15/23 NR/AAA 1,043,110
1,775 7.079%, 7/15/27 NR/AAA 1,837,959
1,845 State Housing Finance Agcy. State Personal Income Tax Rev., 7.37%, 3/15/33, Ser. 859 NR/AA 2,375,806
700 State Urban Dev. Corp. Rev., 8.457%, 3/15/35 NR/AAA 771,470
1,000 Triborough Bridge & Tunnel Auth. Rev., 7.37%, 11/15/32, Ser. 912 (MBIA) NR/NR 1,093,760
  Total New York Variable Rate Notes (cost–$10,719,459)   11,986,028

NEW YORK VARIABLE RATE DEMAND NOTES (e)(f)–0.7%

  New York City Transitional Finance Auth. Rev.,    
400 3.95%, 7/3/06, Ser. C VMIG1/A-1+ 400,000
480 4.00%, 7/3/06, Ser. 1 VMIG1/A-1+ 480,000
  Total New York Variable Rate Demand Notes (cost–$880,000)   880,000
 

U.S. TREASURY BILLS (h)–0.3%

   
425 4.80%-4.82%, 9/14/06 (cost–$420,746)   420,746
  Total Investments before options written (cost–$121,415,747)–100.0% 127,706,486

OPTIONS WRITTEN (g)–(0.0)%

Contracts      
 

Call Options–(0.0)%

   
  U.S. Treasury Notes 10 yr. Futures, Chicago Board of Trade,    
62 strike price $108, expires 8/25/06   (1,937)
 

Put Options–(0.0)%

   
  U.S. Treasury Notes 10 yr. Futures, Chicago Board of Trade,    
62 strike price $103, expires 8/25/06   (8,719)
  Total Options Written (premiums received–$17,034)   (10,656)
  Total Investments net of options written (cost–$121,398,713)–100.0% $127,695,830




Notes to Schedule of Investments:

Portfolio securities and other financial instruments for which market quotations are readily available are stated at market value. Portfolio securities and other financial instruments for which market quotations are not readily available or if a development/event occurs that may significantly impact the value of a security are fair-valued, in good faith, pursuant to guidelines established by the Board of Trustees. The Fund's investments are valued daily using prices supplied by an independent pricing service or dealer quotations, or are valued at the last sale price on the exchange that is the primary market for such securities, or the quoted mean price for those securities for which the over-the-counter market is the primary market or for listed securities in which there were no sales. Independent pricing services use information provided by market makers or estimates of market values obtained from yield data relating to investments or securities with similar characteristics. Exchange traded options and futures are valued at the settlement price determined by the relevant exchange. Securities purchased on a when-issued or delayed delivery basis are marked to market daily until settlement at the forward settlement value. Short-term securities maturing in 60 days or less are valued at amortized cost, if their original term to maturity was 60 days or less, or by amortizing their value on the 61st day prior to maturity, if the original term to maturity exceeded 60 days. The prices used by the Fund to value securities may differ from the value that would be realized if the securities were sold. The Fund's net asset value is determined daily as of the close of regular trading (normally, 4:00 p.m. Eastern time) on the New York Stock Exchange (‘‘NYSE’’) on each day the NYSE is open for business.
(a)  Pre-refunded bonds are collateralized by U.S. Government or other eligible securities which are held in escrow and used to pay principal and interest and retire the bonds at the earliest refunding date (payment date).
(b)  144A Security – Security exempt from registration, under Rule 144A of the Securities Act of 1933. These securities may be resold in transactions exempt from registration, typically only to qualified institutional buyers. Unless otherwise indicated, these securities are not considered to be illiquid.
(c)  When-issued security. To be settled after June 30, 2006.
(d)  Residual Interest Municipal Bonds (‘‘RIBS’’)/Residual Interest Tax Exempt Bonds (‘‘RITES’’) – The interest rate shown bears an inverse relationship to the interest rate on another security or the value of an index.
(e)  Variable Rate Notes – instruments whose interest rates change on specified date (such as a coupon date or interest payment date) and/or whose interest rates vary with changes in a designated base rate (such as the prime interest rate). The interest rate disclosed reflects the rate in effect on June 30, 2006.
(f)  Maturity date shown is date of next put.
(g)  Non-income producing.
(h)  All or partial amount segregated as collateral for futures contracts or when-issued securities.

Glossary:

AMBAC – insured by American Municipal Bond Assurance Corp.

FGIC – insured by Financial Guaranty Insurance Co.

FHA – insured by Federal Housing Administration

FSA – insured by Financial Security Assurance, Inc.

GNMA – insured by Government National Mortgage Association

GO – General Obligation Bond

GTD – Guaranteed

MBIA – insured by Municipal Bond Investors Assurance

NR – Not Rated

Radian – insured by Radian Guaranty, Inc.




Other Investments:

(1)  Futures contracts outstanding at June 30, 2006:

Type Notional Amount
(000)
Expiration
Date
Unrealized
Appreciation
(Depreciation)
Long:   U.S. Treasury Notes 5 yr. Futures $ 147
9/29/06
$ (99,391
)
Short:   U.S. Treasury Bond Futures (374
)
9/20/06
91,774
   
 
$ (7,617
)
(2)   Transactions in options written for the nine months ended June 30, 2006:

  Contracts Premiums
Options outstanding, September 30, 2005 446
$ 121,472
Options written 479
128,569
Options terminated in closing transactions (186
)
(55,042
)
Options expired (615
)
(177,965
)
Options outstanding, June 30, 2006 124
$ 17,034



Item 2.    Controls and Procedures

(a)   The registrant's President and Chief Executive Officer and Principal Financial Officer have concluded that the registrant's disclosure controls and procedures (as defined in Rule 30a-2(c) under the Investment Company Act of 1940, as amended are effective based on their evaluation of these controls and procedures as of a date within 90 days of the filing date of this document.

(b)   There were no significant changes in the registrant's internal controls or in factors that could affect these controls subsequent to the date of their evaluation, including any corrective actions with regard to significant deficiencies and material weaknesses.

Item 3.    Exhibits

(a) Exhibit 99.302 Cert. – Certification pursuant to Section 302 of the Sarbanes-Oxley Act of 2002




SIGNATURES

Pursuant to the requirements of the Securities Exchange Act of 1934 and the Investment Company Act of 1940, the registrant has duly caused this report to be signed on its behalf by the undersigned, thereunto duly authorized.

Registrant: PIMCO New York Municipal Income Fund III
By /s/ Brian S. Shlissel
President & Chief Executive Officer

Date: August 17, 2006

By /s/ Lawrence G. Altadonna
Treasurer, Principal Financial & Accounting Officer

Date: August 17, 2006

Pursuant to the requirements of the Securities Exchange Act of 1934 and the Investment Company Act of 1940, this report has been signed below by the following persons on behalf of the registrant and in the capacities and on the dated indicated.

By /s/ Brian S. Shlissel
President & Chief Executive Officer

Date: August 17, 2006

By /s/ Lawrence G. Altadonna
Treasurer, Principal Financial & Accounting Officer

Date: August 17, 2006